Bioprospekting and Metagenomics of Ecosystems

Bioprospekting and Metagenomics of Ecosystems

1. Kompantseva EI, Kublanov IV, Perevalova AA, Chernyh NA, Toshchakov SV, Litti YV, Antipov AN, Bonch-Osmolovskaya EA, Miroshnichenko ML. Calorithrix insularis gen. nov., sp. nov., a novel representative of the phylum Calditrichaeota. Int J Syst Evol Microbiol. 2016 Dec 16.

DOI: 10.1099/ijsem.0.001744.

https://www.ncbi.nlm.nih.gov/pubmed/27983475

Impact Factor: 2.80

2. Frolov EN, Kublanov IV, Toshchakov SV, Samarov NI, Novikov AA, Lebedinsky AV, BonchOsmolovskaya EA, Chernyh NA. Thermodesulfobium acidiphilum sp. nov., a new thermoacidophilic sulfate-reducing chemoautotrophic bacterium from a Kamchatkan thermal site. Int J Syst Evol Microbiol. 2016

DOI: 10.1099/ijsem.0.001745

https://www.ncbi.nlm.nih.gov/pubmed/27995866

Impact Factor: 2.80

3. AV Teplyuk, NI Samarov, AA Korzhenkov, MO Ul’yanova, MA Goeva, IV Kublanov, TA Kanapatskii, NV Pimenov, SV Toshchakov. Analysis of chitinase diversity in the Baltic Sea bottom sediments. Microbiology (Russia). 2017

Impact Factor: 0.80

4. Podosokorskaya OA, Merkel AY, Gavrilov SN, Fedoseev I, Heerden Ev, Cason ED, Novikov AA, Kolganova TV, Korzhenkov AA, Bonch-Osmolovskaya EA, Kublanov IV. Tepidibacillus infernus sp. nov., a moderately thermophilic, selenate- and arsenate-respiring hydrolytic bacterium isolated from a gold mine, and emended description of the genus Tepidibacillus. Int J Syst Evol Microbiol. 2016

DOI: 10.1099/ijsem.0.001166.

https://www.ncbi.nlm.nih.gov/pubmed/27216447

Impact Factor: 2.80

5. Ivanova, A.A., Kulichevskaya, I.S., Merkel, A.Y., Toshchakov, S.V., Dedysh, S.N. High diversity of planctomycetes in soils of two lichen-dominated sub-arctic ecosystems of Northwestern Siberia. Frontiers in Microbiology. 2016; 7: 2065.

DOI: 10.3389/fmicb.2016.02065

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5177623/

Impact Factor: 3.94

6. Sorokin DY, Messina E, Smedile F, Roman P4, Damsté JS, Ciordia S, Mena MC, Ferrer M, Golyshin PN, Kublanov IV, Samarov NI, Toshchakov SV, La Cono V, Yakimov MM. Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats. ISME Journal. 2016.203. [Epub ahead of print]

http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej2016203a.html

Impact Factor: 9.328

7. Messina E, Sorokin DY, Kublanov IV, Toshchakov S, Lopatina A, Arcadi E, Smedile F, La Spada G, La Cono V, Yakimov MM. Complete genome sequence of 'Halanaeroarchaeum sulfurireducens' M27-SA2, a sulfur-reducing and acetate-oxidizing haloarchaeon from the deep-sea hypersaline anoxic lake Medee.

Stand Genomic Sci. 2016 May 13;11:35

https://www.ncbi.nlm.nih.gov/pubmed/27182430

Impact Factor: 1.88

8. Kochetkova TV, Kublanov IV, Toshchakov SV, Osburn MR, Novikov AA, Bonch-Osmolovskaya EA, Perevalova AA. Thermogladius calderae gen. nov., sp. nov., an anaerobic, hyperthermophilic crenarchaeote from a Kamchatka hot spring. Int J Syst Evol Microbiol. 2016 Jan 21. Volume 66, Issue 3, Pages 1407-1412

http://www.ncbi.nlm.nih.gov/pubmed/26801582

Impact Factor: 2.80

9. Toshchakov SV, Korzhenkov AA; Samarov NI; Mazunin IO, Mozhey OI; Shmyr IS; Derbikova KS; Taranov EA; Dominova IN; Bonch-Osmolovskaya EA, Patrushev MV, Podosokorskaya OA, Kublanov IV.

Complete genome sequence of and proposal of Thermofilum uzonense sp. nov. a novel hyperthermophilic crenarchaeon and emended description of the genus Thermofilum.

Stand Genomic Sci. 2015 Dec 9;10:122.

http://www.ncbi.nlm.nih.gov/pubmed/26664700

Impact Factor: 3.17

10. Sorokin DY, Toshchakov SV, Kolganova TV and Kublanov IV. Halo(natrono)archaea isolated from hypersaline lakes utilize cellulose and chitin as growth substrates. Front. Microbiol. 2015. 6:942

http://journal.frontiersin.org/article/10.3389/fmicb.2015.00942/full

Impact Factor: 3.94

11. Placido A, Hai T, Ferrer M, Chernikova TN, Distaso M, Armstrong D, Yakunin AF, Toshchakov SV, Yakimov MM, Kublanov IV, Golyshina OV, Pesole G, Ceci LR, Golyshin PN. Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase. Appl Microbiol Biotechnol. 2015 Aug 13.

http://link.springer.com/article/10.1007/s00253-015-6873-x/fulltext.html

Impact Factor: 3.81

12. Stepan V Toshchakov, Ilya V Kublanov, Enzo Messina, Michail M Yakimov, Peter N Golyshin. Genomic Analysis of Pure Cultures and Communities. Hydrocarbon and Lipid Microbiology Protocols (Springer Protocols Handbooks), 08/2015 pp 1-21.

http://link.springer.com/protocol/10.1007/8623_2015_126

13. Merkel AY, Korneeva VA, Tarnovetskii I Yu, Bryukhanov AL, Chasovnikov VK, Taranov EA, Toshchakov SV, Pimenov NV. Structure of the archaeal community in the Black Sea photic zone. Microbiology. 2015 (Jul-Aug); 84(4):570-576.

http://link.springer.com/article/10.1134/S0026261715040128

Impact Factor: 0.71

14. Kovaleva OL, Merkel AY, Novikov AA, Baslerov RV, Toshchakov SV, Bonch-Osmolovskaya EA. Tepidisphaera mucosa gen. nov., sp. nov., a moderately thermophilic member of the class Phycisphaerae in the phylum Planctomycetes, and proposal of a new family, Tepidisphaeraceae fam. nov., and a new order, Tepidisphaerales ord. nov. Int J Syst Evol Microbiol. 2015 Feb;65(Pt 2):549-55

http://www.ncbi.nlm.nih.gov/pubmed/25404483

Impact Factor: 2.80

15. Gasanov NB, Toshchakov SV, Georgiev PG, Maksimenko OG. The Use of Transcription Terminators to Generate Transgenic Lines of Chinese Hamster Ovary Cells (CHO) with Stable and High Level of Reporter Gene Expression. Acta Naturae. 2015 Jul-Sep;7(3):74-80.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4610167/

Impact Factor: 1.00

16. Podosokorskaya OA, Bonch-Osmolovskaya EA, Godfroy A, Gavrilov SN, Beskorovaynaya DA, Sokolova TG, Kolganova TV, Toshchakov SV, Kublanov IV. Thermosipho activus sp. nov., a thermophilic, anaerobic, hydrolytic bacterium isolated from a deep-sea sample. Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3307-13.

http://www.ncbi.nlm.nih.gov/pubmed/24994778

Impact Factor: 2.80

17. Podosokorskaya OA, Bonch-Osmolovskaya EA, Beskorovaynyy AV, Toshchakov SV, Kolganova TV, Kublanov IV. Mobilitalea sibirica gen. nov., sp. nov., a halotolerant polysaccharide-degrading bacterium. Int J Syst Evol Microbiol. 2014 Aug;64(Pt 8):2657-61.

http://www.ncbi.nlm.nih.gov/pubmed/24827706

Impact Factor: 2.80

18. Dominova IN, Kublanov IV, Podosokorskaya OA, Derbikova KS, Patrushev MV, Toshchakov SV.

Complete Genomic Sequence of "Thermofilum adornatus" Strain 1910bT, a Hyperthermophilic Anaerobic Organotrophic Crenarchaeon. Genome Announc. 2013 Sep 12;1(5). pii: e00726-13. doi: 10.1128/genomeA.00726-13.

http://www.ncbi.nlm.nih.gov/pubmed/24029764

19. Dominova IN, Sorokin DY, Kublanov IV, Patrushev MV, Toshchakov SV Complete Genome Sequence of Salinarchaeum sp. Strain HArcht-Bsk1T, Isolated from Hypersaline Lake Baskunchak, Russia. Genome Announc. 2013, Jul-Aug; 1(4): e00505-13

http://www.ncbi.nlm.nih.gov/pubmed/23868130


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